The aim of this special session is to contribute to the cross-fertilization between the research in machine learning methods and their applications to systems biology (i.e., complex biological and medical questions) by bringing together method developers and experimentalists.
Summary
Biology is rapidly turning into an information science, thanks to enormous advances in the ability to observe the molecular properties of cells, organs and individuals. This wealth of data allows us to model molecular systems at an unprecedented level of detail and to start to understand the underlying biological mechanisms. This field of systems biology creates a huge need for methods from machine learning, which find statistical dependencies and patterns in these large-scale datasets and that use them to establish models of complex molecular systems. MLSB is a scientific forum for the exchange between researchers from Systems Biology and Machine Learning, to promote the exchange of ideas, interactions and collaborations between these communities.
Topics
We
encourage submissions bringing forward methods for discovering complex
structures (e.g. interaction networks, molecule structures) and methods
supporting genome-wide data analysis. A non-exhaustive list of topics
suitable for this workshop is:
Methods |
Applications |
Active learning/experimental design |
Biomarker identification |
Bayesian methods |
Epigenetics |
Clustering/biclustering |
Genome-wide association studies |
Data integration/fusion/multi-view learning |
Metabolic modeling and reconstruction |
Deep learning |
Metabolomics |
Feature/subspace selection |
Precision medicine |
Graph inference/completion |
Protein function and structure prediction |
Kernel methods |
Protein-protein interaction networks |
Machine learning algorithms |
Rational drug design |
Multitask/structured output prediction |
Regulatory genomics |
Probabilistic inference |
Sequence annotation |
Semi-supervised learning |
Signaling networks |
Systems identification |
Synthetic biology |
Time-series analysis |
Transcriptomics |
MLSB17 Chairs
Chloé-Agathe Azencott |
MINES ParisTech and Institut Curie, Paris, France |
Magnus Rattray |
University of Manchester, UK |
Scientific Program Committee 2017
Michael Beer |
John Hopkins University |
Andreas Beyer |
University of Cologne |
Karsten Borgwardt |
ETH Zurich |
Celine Brouard |
Aalto university |
Chao Cheng |
Dartmouth Medical School |
Gal Chechik |
Bar Ilan University |
Jason Ernst |
UCLA |
Pierre Geurts |
University of Liege |
Markus Heinonen |
Aalto University |
Antti Honkela |
University of Helsinki |
Laurent Jacob |
Lyon I University |
Lars Kaderali |
University Medicine Greifswald |
Stefan Kramer |
Johannes Gutenberg University Mainz |
Anshul Kundaje |
Stanford University |
Hiroshi Mamitsuka |
Kyoto University / Aalto University |
Yves Moreau |
KU Leuven |
Sara Mostafavi |
UBC |
Bernard Ng |
University of British Columbia |
Mahesan Niranjan |
University of Southampton |
Uwe Ohler |
Max Delbrueck Center & Humboldt University |
Nico Pfeifer |
Department of Computer Science, University of Tübingen |
Gerald Quon |
University of California, Davis |
Min Martin Renqiang |
NEC Laboratories America |
Simon Rogers |
Department of Computing Science, University of Glasgow |
Guido Sanguinetti |
University of Edinburgh |
Alexander Schliep |
Gothenburg University |
Li Shen |
Icahn School of Medicine at Mount Sinai |
Motoki Shiga |
Gifu University |
Oliver Stegle |
EMBL-European Bioinformatics Institute |
Giorgio Valentini |
Universita' degli Studi di Milano |
Aki Vehtari |
Helsinki University of Technology |
Jean-Philippe Vert |
Mines ParisTech |
Jinbo Xu |
Toyota Technological Institute at Chicago |
Contact
For further information, please contact the Chairs. |